September 2016 - Pharo-users

Re: [Pharo-users] About Seaside3.2

by Norbert Hartl

Stef, > Am 30.09.2016 um 08:47 schrieb stepharo <stepharo(a)free.fr>: > > Hi guys > > I wanted to show latest version of Seaside and I took Seaside on CI > > and I do not get ZincAdaptor. Seaside looks dying to me sadly. > > What should I do ? > seaside is not (!!) dying. If you do Metacello new configuration: 'Seaside3'; repository: 'http://www.smalltalkhub.com/mc/Seaside/MetacelloConfigurations/main'; version: '3.2.0'; load. you load everything needed. I must confess I'm always confused about that, too. Meaning from where to load which configuration. In this regard seaside is a complete mess. Seems like the catalog does not point to the right version, not good. After thatâ¦.You open the World menu->tools->seaside control panel. Right-click->add-adaptor und choose ZnZincServerAdaptor. Enter port 8080 (alread there) and ok. Point your browser to http://localhost:8080/ et voilÃ Norbert

Sept. 30, 2016

Re: [Pharo-users] About Seaside3.2

by Stephan Eggermont

On 30-09-16 09:57, Denis Kudriashov wrote: > Hi. > > I use this script to install and start server: > > Metacello new > configuration: 'Seaside3'; > repository: > 'http://www.smalltalkhub.com/mc/Seaside/MetacelloConfigurations/main'; > version: '3.2.0'; > load. > > server := ZnZincServerAdaptor startOn: 8080 You probably want to refer to #'release3.2' as the version though (as that gives you 3.2.1, and will receive bugfixes) Stephan

Sept. 30, 2016

Re: [Pharo-users] About Seaside3.2

by Denis Kudriashov

2016-09-30 9:57 GMT+02:00 Denis Kudriashov <dionisiydk(a)gmail.com>: > Hi. > > I use this script to install and start server: > > Metacello new > configuration: 'Seaside3'; > repository: > 'http://www.smalltalkhub.com/mc/Seaside/MetacelloConfigurations/main'; > version: '3.2.0'; > load. > > server := ZnZincServerAdaptor startOn: 8080 > It works without problem for me

Sept. 30, 2016

Re: [Pharo-users] About Seaside3.2

by Denis Kudriashov

Hi. I use this script to install and start server: Metacello new configuration: 'Seaside3'; repository: 'http://www.smalltalkhub.com/mc/Seaside/MetacelloConfigurations/main'; version: '3.2.0'; load. server := ZnZincServerAdaptor startOn: 8080 2016-09-30 8:47 GMT+02:00 stepharo <stepharo(a)free.fr>: > Hi guys > > I wanted to show latest version of Seaside and I took Seaside on CI > > and I do not get ZincAdaptor. Seaside looks dying to me sadly. > > What should I do ? > > Stef > > >

Sept. 30, 2016

About Seaside3.2

by stepharo

Hi guys I wanted to show latest version of Seaside and I took Seaside on CI and I do not get ZincAdaptor. Seaside looks dying to me sadly. What should I do ? Stef

Sept. 30, 2016

Re: [Pharo-users] Speeding-up >>#instVarNamed: in Pharo-5.0 and beyond?

by Tudor Girba

Not bad! This should have a significant impact when creating Pharo objects out of external data. Cheers, Doru > On Sep 29, 2016, at 2:04 PM, Holger Freyther <holger(a)freyther.de> wrote: > > >> On 29 Sep 2016, at 12:28, Denis Kudriashov <dionisiydk(a)gmail.com> wrote: >> >> Cool. >> >> What the percentage of speedup? > > Random micro benchmark... > > | m | > m := Morph new. > [ | var | > var := m instVarNamed: #submorphs > ] bench > > From: 983,066 per second > To: 1,302,098 per second > > > -- www.tudorgirba.com www.feenk.com "Next time you see your life passing by, say 'hi' and get to know her."

Sept. 29, 2016

Re: [Pharo-users] PhyloclassTalk Demo Video

by Serge Stinckwich

On Thu, Sep 29, 2016 at 6:38 PM, HernÃ¡n Morales Durand <hernan.morales(a)gmail.com> wrote: > > > 2016-09-29 5:22 GMT-03:00 Serge Stinckwich <serge.stinckwich(a)gmail.com>: >> >> On Thu, Sep 29, 2016 at 10:02 AM, HernÃ¡n Morales Durand >> <hernan.morales(a)gmail.com> wrote: >> > Hi Serge, >> > >> > 2016-09-29 4:05 GMT-03:00 Serge Stinckwich <serge.stinckwich(a)gmail.com>: >> >> >> >> Hi HernÃ¡n, >> >> >> >> very impressive demo ! >> >> >> > >> > Thanks! >> > >> >> >> >> We are working on similar tools in the context of epidemiological >> >> modelling: >> >> https://github.com/UMMISCO/kendrick >> >> >> >> I see the nice table views. >> >> Did you build something specific or reuse existing stuff ? Can you >> >> edit tables from UI ? >> > >> > >> > I built several support packages. From helpers like SpecUIAddOns and >> > StringExtensions to a Query Builder and a Project Framework (the Project >> > UI >> > is based on the work of Peter Uhnak IIRC). The GenBank Browser could be >> > generalized to a XML node editor. >> > >> > For editing tables it was never a requirement for the app. >> >> Ok I will have a look later. >> >> >> Territories looks interesting. We might be interesting to use such >> >> information for building spatial epidemiology simulation evolving many >> >> countries. Looks at Ebola modelling we have done here: >> >> >> >> >> >> https://dl.dropboxusercontent.com/u/31543901/AgileVisualization/Epidemiolog… >> >> >> > >> > It looks really interesting! >> > >> > For Territorial I am analyzing now what we could get from Bioregions. >> > Integration of repositories is not so straightforward, so I plan also to >> > finish my Code Generator to automate generation of classes and methods >> > when >> > importing CSV's and XML's, a good test case could be the Unicode's CLDR. >> > In PhyloclasTalk for most analysis we start always from the reported DNA >> > sequences, for example if we would have to analyze Ebola we would start >> > from >> > here >> > >> > https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/Database/nph-select.cgi >> > and then apply NER to curate the locations or other features of >> > isolates. If >> > you execute the query for Zaire ebolavirus, the PhyloclassTalk GenBank >> > Browser could be adapted to load the CSV (which seems pretty curated) or >> > accession list, and then use the Classifier directly. >> > I see you define routes in your code, good starting point to add the >> > feature >> > :) >> >> Routes ? yes, because usually when you are doing an epidemiological >> modeling, you want to know how the countries are connected and what >> the rates of propagation between these countries. Some people are >> using flights routes also (they are available freely on Internet). >> >> We are not working at the level of virus DNA sequences, we are just >> modelling propagation of diseases. >> But integrating both would be amazing in the long term. >> >> I think that Territorial is not MIT, all Kendrick code is MIT and I'm >> bit reluctant to mix licences. >> This is the only drawback for me at the moment. >> > > I changed the Territorial license to MIT some days after the announce: > http://forum.world.st/ANN-Territorial-Re-Licensing-td4914705.html Great Hernan ! Thank you. I will have a look when I found time :-) -- Serge Stinckwich UCBN & UMI UMMISCO 209 (IRD/UPMC) Every DSL ends up being Smalltalk http://www.doesnotunderstand.org/

Sept. 29, 2016

Re: [Pharo-users] PhyloclassTalk Demo Video

by Serge Stinckwich

Thank Denis. I'm a bit busy actually, but I will have a look. On Thu, Sep 29, 2016 at 6:49 PM, Denis Kudriashov <dionisiydk(a)gmail.com> wrote: > > 2016-09-29 9:05 GMT+02:00 Serge Stinckwich <serge.stinckwich(a)gmail.com>: >> >> I see the nice table views. >> Did you build something specific or reuse existing stuff ? Can you >> edit tables from UI ? > > > Just to mention: FastTable allows editing. It supports any morph inside > cells -- Serge Stinckwich UCBN & UMI UMMISCO 209 (IRD/UPMC) Every DSL ends up being Smalltalk http://www.doesnotunderstand.org/

Sept. 29, 2016

Re: [Pharo-users] PhyloclassTalk Demo Video

by HernÃ¡n Morales Durand

Thank you Alex!! Cheers, HernÃ¡n 2016-09-29 11:44 GMT-03:00 Alexandre Bergel <alexandre.bergel(a)me.com>: > Hi HernÃ¡n, > > Impressive work! > Very cool demo! Object Profile will advertise your work > > Alexandre > > On Sep 29, 2016, at 2:38 AM, HernÃ¡n Morales Durand < > hernan.morales(a)gmail.com> wrote: > > > I want to share with you a video I did just yesterday (no audio yet) of > the PhyloclassTalk application: > > https://youtu.be/1iPbDHbjbLU > > As some of you may know, I work in a research institute, so the workflow > is very specific to phylogeography and bioinformatics. But I hope you may > find it useful as a showcase for Pharo, or to grab some ideas. It took some > years to get here. > > It also uses code many of you wrote, so you can say Hi! if you recognize > your source there :) > > Here is the web site for documentation and details: > http://phyloclasstalk.github.io/ > > I would love to read your recommendations, or comments. > > Cheers, > > HernÃ¡n > > > >

Sept. 29, 2016

Re: [Pharo-users] PhyloclassTalk Demo Video

by Denis Kudriashov

2016-09-29 9:05 GMT+02:00 Serge Stinckwich <serge.stinckwich(a)gmail.com>: > I see the nice table views. > Did you build something specific or reuse existing stuff ? Can you > edit tables from UI ? > Just to mention: FastTable allows editing. It supports any morph inside cells

Sept. 29, 2016