You can try rebuilding the rpackage structure.

1) close all browsers
2) execute RPackageOrganizer default initializeFromMC

Esteban

> On 28 Jan 2015, at 16:50, Usman Bhatti <usman.bhatti@gmail.com> wrote:
>
> Hello,
>
> I have two packages MyPackage and MyPackage-Ext. When I load MyPackge-Ext, MyPackage becomes dirty and do not have any clue why. When I try to see changes in MyPackage in Monticello Browser, the package becomes clean again.
>
> There are two possibilities why MyPackage-Ext makes MyPackage dirty:
> -> There are names conflict of some sort (MyPackage-Ext can be seen as a category for MyPackage).
> -> Overriding of the extension methods introduced on the third package. Now I wrote a small script to verify it:
> firstCollection := (RPackage organizer packageNamed: 'MyPackage') extensionMethods values flatten.
> secondCollection := (RPackage organizer packageNamed: 'MyPackage-Ext') extensionMethods values flatten.
> (secondCollection intersection: firstCollection)
> The above script gives empty result so there are no overriding selectors.
>
> Any ideas how can I hack into Monticello to see what is causing MyPackage to become dirty while I load the second one manually. May be by logging the override load definitions on Transcript?
>
> In general, will it be possible to see overriding without these disappearing when doing changes on a dirty package?
>
>
> tx in advance.
>
> Usman
>
>