[Pharo-dev] Relation tower is coming for Roassal

Tudor Girba tudor at tudorgirba.com
Fri Dec 27 15:27:55 EST 2013


Hi,

I think there is a little confusion here.

I meant to say that Roassal allows you to map your whatever objects onto a
visualization. How you do this mapping is completely up to you. If you have
a million objects, you will have to do some preprocessing yourself. That is
all. There really is no magic involved. I just like to use "transformation"
as a term in order to point out that visualization is no different than any
other object manipulation.

Did I address your concern?

Cheers,
Doru




On Thu, Dec 26, 2013 at 9:48 PM, Hernán Morales Durand <
hernan.morales at gmail.com> wrote:

> Hi Tudor,
> Thanks for the clarification.
> Can you comment or point a link for the mechanism to transform my data for
> Roassal? Because if you want to visualize big data like population or
> association studies input is sometimes millions of rows. Of course I am not
> asking you to write my parsers :)
>
> Cheers,
>
> Hernán
>
>
>
>
> 2013/12/26 Tudor Girba <tudor at tudorgirba.com>
>
>> Hi Hernán,
>>
>> The input should be independent from the visualization engine. Roassal
>> offers you a way of transforming your objects into a visualization and it
>> should not be responsible for the input formats.
>>
>> Cheers,
>> Doru
>>
>>
>> On Thu, Dec 26, 2013 at 9:28 PM, Hernán Morales Durand <
>> hernan.morales at gmail.com> wrote:
>>
>>> Hi Alexandre and Ricardo,
>>>
>>> I am glad to see your advances in Roassal visualization!
>>> I wonder which input formats do you plan to support?
>>>
>>> Your relation tower can be used to visualize the crossover percentages
>>> between haplotype blocks. For example, here are some Haplotypes drawings
>>> from Haploview (http://en.wikipedia.org/wiki/Haploview) which may
>>> interest you:
>>>
>>>
>>> http://www.jnsbm.org/viewimage.asp?img=JNatScBiolMed_2012_3_2_139_101887_f13.jpg
>>> from this paper
>>> http://www.jnsbm.org/temp/JNatScBiolMed32139-5367486_145434.pdf
>>>
>>> http://www.mailund.dk/wp-content/uploads/2010/04/haplotypes.png
>>>
>>> http://www.mailund.dk/wp-content/uploads/2010/04/journal.pone_.0010207.g005.png
>>>
>>> I can send you the exported haplotypes from a study if you are
>>> interested. It contains 131 blocks which is somewhat big to attach to this
>>> list. The only problem I see is that a parser is needed to parse the
>>> Haplotype text output file, although the format should not be difficult to
>>> parse.
>>>
>>> Cheers,
>>>
>>> Hernán
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> 2013/12/17 Alexandre Bergel <alexandre.bergel at me.com>
>>>
>>>> Hi!
>>>>
>>>> A new builder for Roassal is coming… The goal of Relation tower is to
>>>> easily visualize relations between group of elements. We had the
>>>> inspiration from the following website http://peoplemov.in/#!
>>>>
>>>> Here are some screenshots:
>>>>
>>>> https://www.facebook.com/media/set/?set=a.559114290841839.1073741837.340543479365589&type=3
>>>>
>>>> If you like these screenshots, then you know where the like button is
>>>> :-)
>>>>
>>>> We will have this visualization on the web, thanks to our smooth and
>>>> nice Pharo2Amber migration process.
>>>>
>>>> Any idea on how to extend/apply Relation tower? Any set of data you
>>>> want us to play with? Your data?
>>>> Feedback are very welcome!
>>>>
>>>> Cheers,
>>>> Ricardo & Alexandre
>>>>
>>>> --
>>>> _,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:
>>>> Alexandre Bergel  http://www.bergel.eu
>>>> ^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;.
>>>>
>>>>
>>>>
>>>
>>
>>
>> --
>> www.tudorgirba.com
>>
>> "Every thing has its own flow"
>>
>
>


-- 
www.tudorgirba.com

"Every thing has its own flow"
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.pharo.org/pipermail/pharo-dev_lists.pharo.org/attachments/20131227/067427ba/attachment-0002.html>


More information about the Pharo-dev mailing list