[Pharo-dev] Relation tower is coming for Roassal

Hernán Morales Durand hernan.morales at gmail.com
Fri Dec 27 04:22:39 EST 2013


Done.
Cheers,

Hernán

2013/12/27 Alexandre Bergel <alexandre.bergel at me.com>

> Hi Hernán,
>
> Can you send me privately some data that I can try?
> If you want to do some modeling, I would suggest to use Moose and use
> Roassal for the visualization.
> We can do a pair programming session on this if you wish. My Skype id is
> alexandre.bergel
>
> Cheers,
> Alexandre
>
>
> On Dec 26, 2013, at 9:48 PM, Hernán Morales Durand <
> hernan.morales at gmail.com> wrote:
>
> > Hi Tudor,
> > Thanks for the clarification.
> > Can you comment or point a link for the mechanism to transform my data
> for Roassal? Because if you want to visualize big data like population or
> association studies input is sometimes millions of rows. Of course I am not
> asking you to write my parsers :)
> >
> > Cheers,
> >
> > Hernán
> >
> >
> >
> >
> > 2013/12/26 Tudor Girba <tudor at tudorgirba.com>
> > Hi Hernán,
> >
> > The input should be independent from the visualization engine. Roassal
> offers you a way of transforming your objects into a visualization and it
> should not be responsible for the input formats.
> >
> > Cheers,
> > Doru
> >
> >
> > On Thu, Dec 26, 2013 at 9:28 PM, Hernán Morales Durand <
> hernan.morales at gmail.com> wrote:
> > Hi Alexandre and Ricardo,
> >
> > I am glad to see your advances in Roassal visualization!
> > I wonder which input formats do you plan to support?
> >
> > Your relation tower can be used to visualize the crossover percentages
> between haplotype blocks. For example, here are some Haplotypes drawings
> from Haploview (http://en.wikipedia.org/wiki/Haploview) which may
> interest you:
> >
> >
> http://www.jnsbm.org/viewimage.asp?img=JNatScBiolMed_2012_3_2_139_101887_f13.jpg
> > from this paper
> > http://www.jnsbm.org/temp/JNatScBiolMed32139-5367486_145434.pdf
> >
> > http://www.mailund.dk/wp-content/uploads/2010/04/haplotypes.png
> >
> http://www.mailund.dk/wp-content/uploads/2010/04/journal.pone_.0010207.g005.png
> >
> > I can send you the exported haplotypes from a study if you are
> interested. It contains 131 blocks which is somewhat big to attach to this
> list. The only problem I see is that a parser is needed to parse the
> Haplotype text output file, although the format should not be difficult to
> parse.
> >
> > Cheers,
> >
> > Hernán
> >
> >
> >
> >
> >
> >
> >
> > 2013/12/17 Alexandre Bergel <alexandre.bergel at me.com>
> > Hi!
> >
> > A new builder for Roassal is coming… The goal of Relation tower is to
> easily visualize relations between group of elements. We had the
> inspiration from the following website http://peoplemov.in/#!
> >
> > Here are some screenshots:
> >
> https://www.facebook.com/media/set/?set=a.559114290841839.1073741837.340543479365589&type=3
> >
> > If you like these screenshots, then you know where the like button is :-)
> >
> > We will have this visualization on the web, thanks to our smooth and
> nice Pharo2Amber migration process.
> >
> > Any idea on how to extend/apply Relation tower? Any set of data you want
> us to play with? Your data?
> > Feedback are very welcome!
> >
> > Cheers,
> > Ricardo & Alexandre
> >
> > --
> > _,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:
> > Alexandre Bergel  http://www.bergel.eu
> > ^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;.
> >
> >
> >
> >
> >
> >
> > --
> > www.tudorgirba.com
> >
> > "Every thing has its own flow"
> >
>
> --
> _,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:
> Alexandre Bergel  http://www.bergel.eu
> ^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;.
>
>
>
>
>
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