[Pharo-dev] Relation tower is coming for Roassal

Hernán Morales Durand hernan.morales at gmail.com
Thu Dec 26 15:48:32 EST 2013


Hi Tudor,
Thanks for the clarification.
Can you comment or point a link for the mechanism to transform my data for
Roassal? Because if you want to visualize big data like population or
association studies input is sometimes millions of rows. Of course I am not
asking you to write my parsers :)

Cheers,

Hernán




2013/12/26 Tudor Girba <tudor at tudorgirba.com>

> Hi Hernán,
>
> The input should be independent from the visualization engine. Roassal
> offers you a way of transforming your objects into a visualization and it
> should not be responsible for the input formats.
>
> Cheers,
> Doru
>
>
> On Thu, Dec 26, 2013 at 9:28 PM, Hernán Morales Durand <
> hernan.morales at gmail.com> wrote:
>
>> Hi Alexandre and Ricardo,
>>
>> I am glad to see your advances in Roassal visualization!
>> I wonder which input formats do you plan to support?
>>
>> Your relation tower can be used to visualize the crossover percentages
>> between haplotype blocks. For example, here are some Haplotypes drawings
>> from Haploview (http://en.wikipedia.org/wiki/Haploview) which may
>> interest you:
>>
>>
>> http://www.jnsbm.org/viewimage.asp?img=JNatScBiolMed_2012_3_2_139_101887_f13.jpg
>> from this paper
>> http://www.jnsbm.org/temp/JNatScBiolMed32139-5367486_145434.pdf
>>
>> http://www.mailund.dk/wp-content/uploads/2010/04/haplotypes.png
>>
>> http://www.mailund.dk/wp-content/uploads/2010/04/journal.pone_.0010207.g005.png
>>
>> I can send you the exported haplotypes from a study if you are
>> interested. It contains 131 blocks which is somewhat big to attach to this
>> list. The only problem I see is that a parser is needed to parse the
>> Haplotype text output file, although the format should not be difficult to
>> parse.
>>
>> Cheers,
>>
>> Hernán
>>
>>
>>
>>
>>
>>
>>
>> 2013/12/17 Alexandre Bergel <alexandre.bergel at me.com>
>>
>>> Hi!
>>>
>>> A new builder for Roassal is coming… The goal of Relation tower is to
>>> easily visualize relations between group of elements. We had the
>>> inspiration from the following website http://peoplemov.in/#!
>>>
>>> Here are some screenshots:
>>>
>>> https://www.facebook.com/media/set/?set=a.559114290841839.1073741837.340543479365589&type=3
>>>
>>> If you like these screenshots, then you know where the like button is :-)
>>>
>>> We will have this visualization on the web, thanks to our smooth and
>>> nice Pharo2Amber migration process.
>>>
>>> Any idea on how to extend/apply Relation tower? Any set of data you want
>>> us to play with? Your data?
>>> Feedback are very welcome!
>>>
>>> Cheers,
>>> Ricardo & Alexandre
>>>
>>> --
>>> _,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:
>>> Alexandre Bergel  http://www.bergel.eu
>>> ^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;.
>>>
>>>
>>>
>>
>
>
> --
> www.tudorgirba.com
>
> "Every thing has its own flow"
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.pharo.org/pipermail/pharo-dev_lists.pharo.org/attachments/20131226/e2dd9d74/attachment-0002.html>


More information about the Pharo-dev mailing list